YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01673
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVKDQEVM LLISDRLLQG GKYNFKNIFR KDDRDFKTRK VIIVLVICLI FIITDLFIIR  60
   61 SHLHQISSRN QDTNSISALL NKQGVTFVKG MSSLKYKIFA FAQLNTNGSL QFESAISKQK 120
  121 FLNLNRKSKH INNNVNRILS IGGTNYSEKL SIMLQDLKKT RRFIMSIIRF LKDNELDGVE 180
  181 LLWNRNTEET LYCELLQHLK MGLEKQEKQY SISLRVPQTG IGKWHIGCEL EDQENADSIN 240
  241 LISMAEYENQ LFGSGGVIRI SEAFNTAWEM KYHACNSNQS SKFNLVIPTI EQTEQIDMQY 300
  301 VWNPEKKEIQ RFNSSTKTEY TKLQMGGVSI WSRDMDYHNN IQLDSYFFER ICSQELGK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.97
Transmembrane Helix	40	59	0.95
Non-Cytoplasmic	60	358	0.99