YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cyp-13A2
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGFVLAVT FSIFLGILTY YLWIWTYWMR KGVKGPRGRP FVGVLDVLLE HETPGLIKLG  60
   61 EWTKKYGKVY GYTDGTQRTL VVADPAMVHE IFVKQFDNFY GRKLNPIQGN PEKEQRVHLL 120
  121 AAQGYRWKRL RTISSQSFSN ASLKKMKRTV EDSALELLRH IEKQTAGGEQ IDMLRFYQEY 180
  181 TMDVIGRFAM GQTDSMMFKN PIVNVVREIF CGSRKNLMLI CQVFPPIGQF IRDLTFKFPR 240
  241 IPAFKLYSIM QDVVAARIAQ REREKGAESG EPQDFIDLFL DARSDDVDFS AEAREDFSKR 300
  301 NLKITKELSA DEVVGQCFLF LIGGFDTTAL SLSYVTYLLA VNPKIQEKVI EEIAREFGTS 360
  361 EVEFEKLGRL KYMDCVIKEA LRLYPLASIS NSRKCMKTTT VNGVKIEAGV YVQMDTWSLH 420
  421 YDPELWGEDV KEFKPERWST DEPLEHKGAY LPFGLGPRQC IGMRLAIMEQ KILLTHLLKN 480
  481 YTFETGNKTR IPLKLVGSAT TSPEDVFVHL RPRIW

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.69
Transmembrane Helix	6	29	0.85
Cytoplasmic	30	317	0.71
Transmembrane Helix	318	332	0.25
Non-Cytoplasmic	333	515	0.56