YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cyp-13A7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSILIAIA IFVGIISYYL WIWSFWIRKG VKGPRGLPFL GVIHKFTNYE NPGALKFSEW  60
   61 TKKYGPVYGI TEGVEKTLVI SDPEFVHEVF VKQFDNFYGR KLTAIQGDPN KNKRVPLVAA 120
  121 QGHRWKRLRT LASPTFSNKS LRKIMGTVEE SVTELVRSLE KASAEGKTLD MLEYYQEFTM 180
  181 DIIGKMAMGQ EKSLMFRNPM LDKVKTIFKE GRNNVFMISG IFPFVGIALR NIFAKFPSLQ 240
  241 MATDIQSILE KALNKRLEQR EADEKAGIEP SGEPQDFIDL FLDARSTVDF FEGEAEQDFA 300
  301 KSEVLKVDKH LTFDEIIGQL FVFLLAGYDT TALSLSYSSY LLATHPEIQK KLQEEVDREC 360
  361 PDPEVTFDQL SKLKYLECVV KEALRLYPLA SLVHNRKCLK TTNVLGMEIE AGTNINVDTW 420
  421 SLHHDPKVWG DDVNEFKPER WESGDELFFA KGGYLPFGMG PRICIGMRLA MMEMKMLLTN 480
  481 ILKNYTFETT PETVIPLKLV GTATIAPSSV LLKLKSRF

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.92
Transmembrane Helix	5	27	0.90
Cytoplasmic	28	214	0.94
Transmembrane Helix	215	234	0.83
Non-Cytoplasmic	235	518	0.84