YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cyp-13A4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSLLIAGA LFIGFLTYYI WIWSFWIRKG VKGPRGFPFF GVILKFHDYE NPGLLKLGEW  60
   61 TKKYGSIYGI TEGVEKTLVV SNPEFVHEVF VKQFDNFYGR KTNPIQGDPN KNKRAHLVLA 120
  121 QGHRWKRLRT LASPTFSNKS LRKIMSTVEE TVVELMRHLD EASAKGKAVD LLDYYQEFTL 180
  181 DIIGRIAMGQ TESLMFRNPM LPKVKEIFKK GGKMPFLIAG VFPIAGTLMR QLFMKFPKFS 240
  241 PAFGIMNTME KALNKRLEQR AADKKAGIEP SGEPQDFIDL FLDARANVDF IEEESTLGFA 300
  301 KSEVLKVDKH LTFDEIIGQL FVFLLAGYDT TALSLSYSSY LLATHPEIQK KLQEEVDREC 360
  361 PDPEVTFDQI SKLKYMECVV KEALRMYPLA SLVHNRKCMK KTNVLGVEID EGTNVQVDTW 420
  421 TLHYDPKVWG DDASEFKPER WETGDELFYA KGGYLPFGMG PRICIGMRLA MMEEKLLLTH 480
  481 ILKKYTFDTS TETEIPLKLV GSATIAPRNV MLKLTPRHSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.86
Transmembrane Helix	6	27	0.92
Cytoplasmic	28	213	0.94
Transmembrane Helix	214	234	0.82
Non-Cytoplasmic	235	520	0.89