YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01650
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	40	0.93
Non-Cytoplasmic	41	84	0.94
Transmembrane Helix	85	103	0.92
Cytoplasmic	104	111	0.80
Transmembrane Helix	112	134	0.88
Non-Cytoplasmic	135	143	0.54
Transmembrane Helix	144	165	0.83
Cytoplasmic	166	176	0.79
Transmembrane Helix	177	197	0.86
Non-Cytoplasmic	198	207	0.79
Transmembrane Helix	208	228	0.95
Cytoplasmic	229	275	0.96
Transmembrane Helix	276	297	0.91
Non-Cytoplasmic	298	314	0.83
Transmembrane Helix	315	337	0.82
Cytoplasmic	338	350	0.80
Transmembrane Helix	351	370	0.93
Non-Cytoplasmic	371	375	0.83
Transmembrane Helix	376	397	0.88
Cytoplasmic	398	406	0.65
Transmembrane Helix	407	427	0.91
Non-Cytoplasmic	428	443	0.79
Transmembrane Helix	444	466	0.91
Cytoplasmic	467	516	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQKECVFV SEKSKIFPST RLFFSFLLCL CFVALAIGTS NISQSMVCMV KKPDTNYTCP  60
   61 LAEPEVEAIP CNHPKQFAWS SIQQGLIYSG QNFGSLFMVI TGWQADRLNG KWTIVAAMAF 120
  121 IIVSNAVLPI SAGASFALVF FLRVLTGFGD ALLSPASSSL ITRWFPPKER PSALGIVTSG 180
  181 RQIGTLIILP IGGWLCGSDG SKFLGGWPAI FYLSSVVAAA VLVIWVVFSA DKPSKHLCIS 240
  241 HNEEAYINRK IEEENIGKRN NRKNTPWKAI FTSKQVWVAV AALVCHEFPL VIMLQFLPKF 300
  301 FSDVLGLSNT VNGLVSALPM AILFLSKCLS ASLASYLTAN GYLRKTQSCK IFNFIASLGL 360
  361 GICIAATPLM SNLQHAIWAI IILCLANAFA GLHTPGVLTA IVQLAPAFSG IITGLAFAVA 420
  421 SCFSIFNKLL ISQILRTGSK HEWTIVFEIS AFVAILPTIF FTLWGSAERT EWASNRVSVP 480
  481 KDADQKSNDS GSSTSSTIQA IAKYSMFLSH DLTNSA