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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gcy-3
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNVFQLLIP LFFHLFSLVS LQNIPVSTGT TRPKLKVGIA AAQKTQSASI GWNVCGGAVP  60
   61 LAIERLKQAG YVTNFDFEYY VEYTECDLAS TVRTGINFLK NLEVDVIIGP PCSEAIRTMA 120
  121 TLATLYKKPV LGWGFVSQAD LSDMTRFPYL ITVLPTSQTL GYAASKLLEL YKWDKVALLY 180
  181 YKSEVNHCGG VMNDVETTFN DPSTYSIQIV LKAEIDASDN VTTNAVISSV KTRARIILWC 240
  241 AQLGSEKRDY MIKISQLGLD TDEYVHVLIS MRSIGFGVQT FVGKTTFKLS GLTPVWESFS 300
  301 NVTDGLENVA KRGATNVLVI DLNSEVSDKA YLDYMQRNIL NVVKLPPLNC STVDCVSSTA 360
  361 TGMGAYARHL FDVVYLYGIA LTRVNSTDSA VYDDMSKLIP QFVTSFNGMT GLVAINQNLS 420
  421 RMPLYQLYGL DEQYEQTSLM NLSFADGTTV ATISLAYSNE SSAVWHFWGG IRPLATPICG 480
  481 FLGNSCPLPF WEQYGILIFV GAGVFLIMIT TNLICFLFMI KNRREEQARI NSEWQIPFVK 540
  541 LRELERKSKG TSKRSLQSAP STITGESKVS TGSEFCENYE VKMFEKDMVL TMKFQYMNLN 600
  601 KADMDKFVKL RKLDHENLNK FIGLSIDSSQ FISVTKLCSR GSLLDILYKG NFSMDFFFMY 660
  661 CIIKDVAEGM SYLHKSFLRL HGNLRSATCL VNDSWQVKLA EFGFDQLLEE ITPTKRRLLW 720
  721 AAPEVLRGSL TVSQMDPSAD VFSFAIIASE ILTRKEAWDL KERKEGYDEI IYRVKKGGSF 780
  781 PIRPDIITDV PDVNPTLIAL VKDCWAEAPE DRPTAENICE QLRDLMPKTK SNLMDHVFNM 840
  841 LEEYTSTLEV EVEERTKELT LEKKKADLLL SRMLPKQVAE RLKAGQTVEP EGFDSVTVFF 900
  901 SDVVKFTILA SKCTPFQVVN LLNDLYSNFD TIIEEHGVYK VESIGDGYLC VSGLPTRNGF 960
  961 NHIKQIVDMS LKFMDYCKNF KIPHLPRERV ELRIGVNSGP CVAGVVGLSM PRYCLFGDTV1020
 1021 NTASRMESNG KPSLIHLTSD AHLLLMKHFP HQYETNSRGE VIIKGKGVME TFWVLGRSGD1080
 1081 IEPSISNRST PPVTQERFTV RAPDTPEARS VSSHGSRPSS NHNNNNDPLY RQYKMDTLKI1140
 1141 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle