YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01603
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.92
Transmembrane Helix	50	69	0.88
Non-Cytoplasmic	70	102	0.84
Transmembrane Helix	103	121	0.80
Cytoplasmic	122	128	0.74
Transmembrane Helix	129	151	0.89
Non-Cytoplasmic	152	159	0.67
Transmembrane Helix	160	179	0.91
Cytoplasmic	180	190	0.86
Transmembrane Helix	191	214	0.89
Non-Cytoplasmic	215	220	0.82
Transmembrane Helix	221	241	0.92
Cytoplasmic	242	284	0.94
Transmembrane Helix	285	305	0.91
Non-Cytoplasmic	306	323	0.89
Transmembrane Helix	324	344	0.90
Cytoplasmic	345	361	0.87
Transmembrane Helix	362	381	0.92
Non-Cytoplasmic	382	386	0.78
Transmembrane Helix	387	408	0.93
Cytoplasmic	409	418	0.80
Transmembrane Helix	419	438	0.94
Non-Cytoplasmic	439	450	0.73
Transmembrane Helix	451	471	0.95
Cytoplasmic	472	573	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRTLKKSA TAISDTLRRT FSSKTWEHRE QLHSLQEDNK FFLRKVRWQI ALLAHFGFAI  60
   61 SFGIRSNFGV AKNRMINNFT DAYGEVHEKE FFWTGTEVGM MESSFFYGYA ASQIPAGVIA 120
  121 AKFAPNKLFM LGILFASLLN IVTAICLNFH PFTDIFVMVI QVMQGLALGV CYPAMHGVWK 180
  181 YWAPPLERSK LATTTFTGAS VGVMVGLPAS AYLVSHFSWS TPFYVFGALG IVWSILWIYV 240
  241 SGTSPETHGY ISADEKKYIT EKVGSVAVKN MTLTTLPWRD MMTSTAVWAI IICSFCRSWS 300
  301 FFLLLGNQLT YMKDVLHIDI KNSGLIAIFP QLGMCIVTLT SGQLSDYLRS SGKMSTEAVR 360
  361 KSVNTFGFTV EAVMLGCLAF VRDPVIAVTF LIIACSGAGA VLSGFNVNHF DIAPRHAPIL 420
  421 MGIANGLGAI AGVGGIVTNS LTYQNPDGWQ WVFLLAMSID IFGIIFFLIF AKGDVLPWAR 480
  481 EPEKEETFNE FVRRMSTMVR SLSRRTRTRS TDTNYDKMEE ERVNSSEMKA CAKSDVPVPE 540
  541 EGVLNETQAI GGSLEVVPEE PANKNLRTDR PEV