YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01562
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPVAISLSL LLLVTLLPGS EQRKVDNPDF QPNCLVGGPD IYDPAQSEKV LWFDVNLDLP  60
   61 PRQRFQQIAK AYKKEIHAVF DVLNYFLTII PGVNAWELIG NMTASALDKG MIMNPYRDEV 120
  121 LGIAEVLDVP LGNLVFLNLF YEMSRFCTSI VAQTEDNKDL YHARNLDFGQ LFVWDIAAQS 180
  181 WGLTEALKKV SVNINFFKNG KLLFKGSTLA GHVGVLTAMK PHKFSLSMNA KVQPDIINVA 240
  241 KWYMGAYENT DLQFVMYFDR WLFENCDDFQ CAREKIAGVK LLTGAYFILG GANPGEGSVL 300
  301 VRNTTSVQFE RKLFDGANDW FLLQTNYDPD KDPLFIDNRR DPGNACMNKL TRANVGMKGI 360
  361 FTVLSSKPNL NKTTVHTVIM SVTKGYFETF IQKCPNPCWA F

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	401	0.99