YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01524
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFLEQSFK KLHIEQSTPA RENLPNREIY QIFQFTLVYA LPLSNHDNSS LMLIAGFYAL  60
   61 LFMFGTCGNA AILAVVHHVK GQDPRSRHNT TLTYICILSI VDFLSMLPIP MTIIDQILGF 120
  121 WMFDTFACKL FRLLEHIGKI FSTFILVAFS IDRYCAVCHP LQVRVRNQRT VFVFLGIMFF 180
  181 VTCVMLSPIL LYAHSKVHFI ITETYRHLIM QKCLRFFEGS VTFFGLQELV MHEKVDLDQE 240
  241 VITRMHLYKC VDDLGRELFV VFTLYSFVLA YLMPLLFMIY FYYEMLIRLF KQANVIKQTL 300
  301 VGRRSGGEEK KLTIPVGHIA IYTLAICSFH FICWTPYWIS ILYSLYEELY QDTKSTASPP 360
  361 TYAFIYFMYG VHALPYINSA SNFILYGLLN RQLHNAPERK YTRNGVGGRQ MSHALTTNTR 420
  421 PEYSELIAIP SSSCRPDSRV SAMIHNNNNN TESLPLAQNI SNMTNKDSAT IVPMPMSANV 480
  481 DGNEIYNWIT PDTESVIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.67
Transmembrane Helix	54	76	0.91
Cytoplasmic	77	90	0.86
Transmembrane Helix	91	114	0.90
Non-Cytoplasmic	115	135	0.85
Transmembrane Helix	136	157	0.79
Cytoplasmic	158	170	0.87
Transmembrane Helix	171	192	0.95
Non-Cytoplasmic	193	260	0.97
Transmembrane Helix	261	283	0.89
Cytoplasmic	284	313	0.94
Transmembrane Helix	314	334	0.89
Non-Cytoplasmic	335	367	0.87
Transmembrane Helix	368	389	0.85
Cytoplasmic	390	498	0.95