YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01478
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	151	0.62
Transmembrane Helix	152	174	0.88
Non-Cytoplasmic	175	181	0.65
Transmembrane Helix	182	202	0.85
Cytoplasmic	203	211	0.60
Transmembrane Helix	212	235	0.85
Non-Cytoplasmic	236	241	0.60
Transmembrane Helix	242	258	0.76
Cytoplasmic	259	268	0.73
Transmembrane Helix	269	288	0.94
Non-Cytoplasmic	289	330	0.77
Transmembrane Helix	331	353	0.91
Cytoplasmic	354	359	0.76
Transmembrane Helix	360	379	0.71
Non-Cytoplasmic	380	382	0.53
Transmembrane Helix	383	407	0.77
Cytoplasmic	408	415	0.43
Transmembrane Helix	416	439	0.76
Non-Cytoplasmic	440	443	0.40
Transmembrane Helix	444	464	0.88
Cytoplasmic	465	471	0.38
Transmembrane Helix	472	495	0.85
Non-Cytoplasmic	496	503	0.41

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKERIKDKAW RPQFIKLNNP DTSKKIVSQK SKKPEIVDLS SPGNNDLVTI SILCVLLCFQ  60
   61 LAISLNPHSG ESQPPMYGDY EAQRHWMEIT VNLPIEQWYL NGTHNDLLYW GLDYPPITAY 120
  121 HHYLLGVISN KINKKWVELT TSRGYESIAH KLFMRLSAII PFYIFYLPPL IFYFTRSKKM 180
  181 SPILYALALL YPSLLVIDNG HFQYNSISLG LFLATYMFLT KNFTIIGSIL FVAALNYKQM 240
  241 ELYHALPVFV FILARSINKT QLFNSFRRIL TIGLFVVGTF LIIWLPFLLT GTAKDVIIRV 300
  301 FPFNRGLYED KVASFWCAFS FILKRLPLQS VQIYISTALV LAGSAPSLLV LFLRPTEKQF 360
  361 RISLTATGLS FFLFSFHVHE KTILLAAVPA LLLISEYTSL VIWFLNITNI SIFSLCVKDN 420
  421 FALSLSFFFA YFVVSYAYTA PRKISHILTI LIGFAICILE LYGPSNQRFP HIYQLANAFF 480
  481 SCVHFIYFLL YLSFASFEKT KKE