YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTKCASKL EIDRLISLNF RINQIIVLIP VFITFIFTYY AIKVVQKKSI FELSTKFLLI  60
   61 QNFFSANLHQ VLYAIETIRR LHISLFETNQ PCIPLKTEFE CRLYLEVFVS GVAGMVYGQT 120
  121 GLLLERACAT FIKNYEEKKS VRTGLAISVS VLCLSFITSR LIIWDDPLDG YQLTCISFPS 180
  181 DSVDRSSYFQ SICTLLALFN LVTSILIWKY NKKFEYSTPF VVGPRFRKRE VIDSTSTICF 240
  241 LTFVQFIFFL VYSLGFFIIK SIREIISYEN YYLVAVWLYT PPYIAASFPI LIFYRIRSSY 300
  301 ANRVLIIKKF TNTKQTIEEH IQQMKNAWK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.73
Transmembrane Helix	20	42	0.89
Non-Cytoplasmic	43	102	0.53
Transmembrane Helix	103	123	0.44
Cytoplasmic	124	142	0.87
Transmembrane Helix	143	164	0.92
Non-Cytoplasmic	165	187	0.96
Transmembrane Helix	188	208	0.95
Cytoplasmic	209	234	0.90
Transmembrane Helix	235	256	0.90
Non-Cytoplasmic	257	274	0.84
Transmembrane Helix	275	294	0.93
Cytoplasmic	295	329	0.95