YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSSCADED LIIRFDSLNQ KAAQFVYLLA IILTFITTYF AVKILFTQSF FEISTKILLV  60
   61 QNLFYANLYQ FFHGIEAVRM LYKSFFMIND PCNFMEPEIE CVFYYKIILM GSSGMVYGQT 120
  121 GLLIERLCAT FSKDYKKKQS AIKCAVISIL VLICSSSTGR LIVWDDPIDK YNFACYIPPK 180
  181 ESYIRANHYF TMCAVLSTIN FCISTFILKY NKRCEYQTRF KVGARFQKQE LIESTKAICF 240
  241 LTVSQFVAVF LNSFGMIVLV YIQESISHRI FNLLVVWLYA FPIVVLMFPV ILVHQIRSSR 300
  301 WRRALKIKVI KNEKQTQDDH MKHMKNMWI

Type	Start	End	Confidence
Cytoplasmic	1	22	0.67
Transmembrane Helix	23	45	0.88
Non-Cytoplasmic	46	102	0.64
Transmembrane Helix	103	123	0.70
Cytoplasmic	124	141	0.89
Transmembrane Helix	142	164	0.89
Non-Cytoplasmic	165	187	0.95
Transmembrane Helix	188	210	0.90
Cytoplasmic	211	237	0.94
Transmembrane Helix	238	262	0.86
Non-Cytoplasmic	263	272	0.88
Transmembrane Helix	273	296	0.87
Cytoplasmic	297	329	0.99