YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNITSASAA QIDHASSWNF RFAVFCSQLS IISTFILSVI AVKWIFTKST FQTSTKIILV  60
   61 FNFVYANIHQ FMYAIISLGM AYKGIFLLDE TCEWLITEKD CLLYTEVLYV GISGMIYSQT 120
  121 GILIERAFAT LYRNYTAKIS RLVGIIISTF VLIMSIATYQ IIISDDPLEG VVLSCFVPAQ 180
  181 HSAQRANTFL FIALILTFVN LISSAAVMFY NKRLEYSIRY KVRERFKKRE AIYSTHTICV 240
  241 VCMAQFVTML VYSSGVLILR CNMSNILLTT FYKLITWVYT VQYNALLFPL ILIFRIRATK 300
  301 LSRTKKIQDI TSANQSQTEH YNQITSAWKI T

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.75
Transmembrane Helix	21	46	0.85
Cytoplasmic	47	57	0.69
Transmembrane Helix	58	81	0.76
Non-Cytoplasmic	82	102	0.71
Transmembrane Helix	103	123	0.64
Cytoplasmic	124	141	0.79
Transmembrane Helix	142	163	0.94
Non-Cytoplasmic	164	188	0.96
Transmembrane Helix	189	211	0.95
Cytoplasmic	212	231	0.96
Transmembrane Helix	232	253	0.94
Non-Cytoplasmic	254	274	0.87
Transmembrane Helix	275	296	0.90
Cytoplasmic	297	331	0.98