YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATIACASII EQQRLRSSNF VIAQYIDLLC IVITFVTTYP AIQLVLNKSL FQWSTKMLIL  60
   61 ESLFFANLYQ IFYGIEAITI LYKHHFMTSD FCNIMQTESN CAPYLKVILG TTGGMIFAQT 120
  121 GLMIERTCAT FLASYRKRKS EIIGFSITII VFFCSSITGK LFIWDDPLDG MVLGCFILPK 180
  181 NSYKRYNTYF TVCTVLPLFN LGISILLKIY NTKLEYSSRF EVSARFQKRE VIDSTGTVCF 240
  241 LAFSLFILLF IYSVGVGALR HLLHENIISQ EDFNLCVVWL YTIPFIAMLL PLLLIYRIRR 300
  301 TRSNRIEMLI EFTKQKQSQE NHISQMKNMW S

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.39
Transmembrane Helix	21	46	0.78
Cytoplasmic	47	57	0.41
Transmembrane Helix	58	81	0.62
Non-Cytoplasmic	82	103	0.59
Transmembrane Helix	104	123	0.59
Cytoplasmic	124	141	0.91
Transmembrane Helix	142	164	0.94
Non-Cytoplasmic	165	187	0.97
Transmembrane Helix	188	210	0.93
Cytoplasmic	211	230	0.97
Transmembrane Helix	231	254	0.89
Non-Cytoplasmic	255	276	0.86
Transmembrane Helix	277	296	0.96
Cytoplasmic	297	331	0.97