YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLTCASSV EQDRFASLNF IISQSVDLIT SFFTYMLSII AIKMVLKQSI FETSTKILLF  60
   61 LNIFYANLYQ IVYSIDVVVI LYKHFFMQEE VCSLLILESS CAPFLETLIG TSSGMMYCQT 120
  121 GLLIERFCAT FLKTYNGKKT IFVGSFIAIV VMISTTSTGK LVIWDDPLDD AVLACFIFPK 180
  181 KSKARSTIHF YISTVVSLFN LAASVALNKY NKTLEYQVRF KICARFHKRQ VIESTETICF 240
  241 LNFTQFVFMF IYSSGNSTLK SIRDYIQPET YNFWVVWCYT VPFIALTFPL LLIYKVKSTR 300
  301 GIRAQKIVQI SNTKQTQDEH INQMKVMWE

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.73
Transmembrane Helix	25	46	0.78
Cytoplasmic	47	57	0.76
Transmembrane Helix	58	80	0.71
Non-Cytoplasmic	81	103	0.64
Transmembrane Helix	104	123	0.65
Cytoplasmic	124	139	0.81
Transmembrane Helix	140	163	0.85
Non-Cytoplasmic	164	187	0.91
Transmembrane Helix	188	210	0.87
Cytoplasmic	211	230	0.91
Transmembrane Helix	231	252	0.83
Non-Cytoplasmic	253	272	0.90
Transmembrane Helix	273	294	0.94
Cytoplasmic	295	329	0.97