YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPNCARKY DIARLSSLNF QISQYVYLSL ISLTFIFSYF AVKIVHQKSI FQLSTKILLF  60
   61 HNLVSANLHQ LLYLFSALRR LNLAYFYIDE PCVPLISEAD CLPYLKVLVT GISGMIYGQT 120
  121 GLLLERGCAT FIKDYDKKTS MFVGIAISIA ILFLSLITGK IIIWDDPLQG YLLSCVSYPS 180
  181 QSVERSRLFA SIYTFISSFN LVFSVLLRRY NKKLEYSTPF VVGPRFRKRE VIDSTSTICF 240
  241 LTFVQFIFMF IYSFGIFTLK TIRSMLTYRQ YYFIVVWFYT IPFIAALFPI LLVYRIRSSH 300
  301 VSRVTIIKTF TKTKQTQEEH IKQLKNVWN

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.58
Transmembrane Helix	23	45	0.85
Cytoplasmic	46	56	0.56
Transmembrane Helix	57	77	0.68
Non-Cytoplasmic	78	103	0.51
Transmembrane Helix	104	123	0.50
Cytoplasmic	124	140	0.91
Transmembrane Helix	141	164	0.92
Non-Cytoplasmic	165	187	0.97
Transmembrane Helix	188	207	0.94
Cytoplasmic	208	234	0.89
Transmembrane Helix	235	256	0.90
Non-Cytoplasmic	257	272	0.89
Transmembrane Helix	273	294	0.93
Cytoplasmic	295	329	0.97