YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLSCAAPD VLERLDSFNM KLSQFVDLLA IILAFFASYF AIKIVINQSF FELSTKILLL  60
   61 QNLFYTNLYQ ISYGIEAIGM LYRGFFMLSE PCSILQSETS CAPYFKVLMI GTSGMIFGQT 120
  121 GLLIERAFAT FATTYKTKKS VYIGVCISLI VLVCSTSSGF IILWDDPLEG WTIGCFAVSK 180
  181 SVVPRFNLFS ILSTVLTLFN LIVSIFIQRY NKRFEFETRF KVGARFQKQE LIESTGAICF 240
  241 LALSQFLWMF MYSFGILILR IIREDILPST FYFWIAWCYT MPFIALMFPV LLIYRIRKTR 300
  301 ARRTEKMKGI TTEKQTQDDH IKQINAMWT

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.62
Transmembrane Helix	25	46	0.88
Cytoplasmic	47	62	0.55
Transmembrane Helix	63	81	0.61
Non-Cytoplasmic	82	103	0.78
Transmembrane Helix	104	124	0.80
Cytoplasmic	125	140	0.86
Transmembrane Helix	141	164	0.93
Non-Cytoplasmic	165	187	0.94
Transmembrane Helix	188	210	0.89
Cytoplasmic	211	230	0.97
Transmembrane Helix	231	252	0.85
Non-Cytoplasmic	253	272	0.79
Transmembrane Helix	273	294	0.95
Cytoplasmic	295	329	0.98