YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gcy-1
Protein type: Transmembrane
Type Confidence: 0.68
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFTILLLF NIFPSIFVQN LPDTTVAPRT KRTIKIGIAA AQRIQTSSIG WSVCGGAVPL  60
   61 AIERLKEMGF VKDFDFEYIV DYTECDLGSV VRAGMEFIKT HKVDVIIGPP CAQALRLMSF 120
  121 LAENYKKPVL GWGFVSDTDL SDVIRFPHLT TVIPNSLMLG YAASKMLTTF HWNRVALLYY 180
  181 FSDVKYCSGV MNDIEATFND PSTPNVNIVI KAEIYLNDNE TTDNVFQTVK SRARIILWCT 240
  241 QTSVEKRDYL IKIATHDMIG DEYVHIMLSM RNVAFGTQTS LGKPTFSQSG LTPIWESFTE 300
  301 GTDGFEKMAK QAATRMFVLD VNSEVADKKY LEYMQKNIIK AVQSPPMNCS TVECMTANTT 360
  361 IMGGYARHLF DVVYLYGIAL THTNSTDPAV YGDVDVLVHQ FVTSFQGMTG HVVISPNLTR 420
  421 MPIFQLYGLN SDYDQVALVD FTYTNSVMVP NVTLFYKDEG GAVWSYYGHS RPLDIPICGF 480
  481 LGKSCPVSFW EQYKILIFVA IAVIVLMVLI MIIGCLCVIS GKRAERARIN AEWQVPFAKL 540
  541 IESEKQVRGK GASRRSLQSA PSISTGHSGV TTVSDFCENY TMMMYEKEMV LTAKYQYTHL 600
  601 TKADKERFVK MRKLDHENIN RFIGLSIDSA HFISVTKLCS RGSLQDILSR GNFSMDYFFM 660
  661 FCIIRDVAKG LEYLHKTFLR LHGNLRSATC LVNDSWQVKL AEYGMDNLVE EQTPPKKRLL 720
  721 WVAPEVLRGS LSVSQMEPSA DIYSFAIIAS EILTKKEAWD ILDRKEDCEE IVYNVKKGGL 780
  781 FPIRPEIITD IHDVNPALIA LVKDCWAEVP EDRPTAENIC SQMKGLVSKQ KTNLMDHVFN 840
  841 MLEEYTSTLE EEIEERTKEL TLEKKKADIL LSRMLPKQVA ERLKAGQTVE PEGFDSVTVF 900
  901 FSDVVKFTIL ASKCSPFQTV NLLNDLYSNF DTIIEQHGVY KVESIGDGYL CVSGLPTRNG 960
  961 YAHIKQIVDM SLKFMEYCKS FNIPHLPREN VELRIGVNSG PCVAGVVGLS MPRYCLFGDT1020
 1021 VNTASRMESN GKPSLIHLTN DAHSLLTTHY PNQYETSSRG EVIIKGKGVM ETFWVHGRFG1080
 1081 EMEPTELRSI SNRSTPPVTN DRWIPNPSSS HGSRPSSVYD PLQGHQKFKM DTLKVAN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle