YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	toc-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAMDFLKKN LNRVDFHSMV SFSWVSRSLH HPQGKRGLIS TLICLACVGI LAYCVSTSHS  60
   61 IVLMSTLWIT IFSFCSQFAS LYSMSITEKP THKFSYGLAR VPVLAVFSTT VLAQLFSIFL 120
  121 SKESFEHLLS PDHHGSHDAS AAHEHEVEEI GGWPYFVGSA ASSVALLLSA YALKNQPFQH 180
  181 VLQSATASSL QEHAADLSHA VCWVIPGLSR LLLPRINSMV LLALTTTGLN LLCEHFKHDF 240
  241 AWADPVCCLL LSVAVFSTMY PLSTYTGMIL LQTTPPHLIN QIDRCISEAS HIDGVLELKS 300
  301 GRFWQLDFNS LVGTVDVRVR RDADEQNVLA HVTEKFSSVI TVLTVQVVKD AAWSAGEQVP 360
  361 YSNGHIHKSE GNHSHDNGHG HSHDHNDHGH SHGHDDHGHD SHGHSHDHNE HDHGHSHGGN 420
  421 NDNHGHSHSA GSDNHHGHSH DGVFYH

Type	Start	End	Confidence
Cytoplasmic	1	36	0.95
Transmembrane Helix	37	56	0.94
Non-Cytoplasmic	57	63	0.65
Transmembrane Helix	64	86	0.86
Cytoplasmic	87	95	0.93
Transmembrane Helix	96	120	0.85
Non-Cytoplasmic	121	151	0.92
Transmembrane Helix	152	173	0.82
Cytoplasmic	174	212	0.78
Transmembrane Helix	213	233	0.64
Non-Cytoplasmic	234	240	0.57
Transmembrane Helix	241	262	0.78
Cytoplasmic	263	446	0.64