YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01416
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	92	0.94
Non-Cytoplasmic	93	130	0.92
Transmembrane Helix	131	151	0.89
Cytoplasmic	152	158	0.84
Transmembrane Helix	159	177	0.96
Non-Cytoplasmic	178	183	0.73
Transmembrane Helix	184	205	0.85
Cytoplasmic	206	215	0.84
Transmembrane Helix	216	238	0.90
Non-Cytoplasmic	239	246	0.77
Transmembrane Helix	247	269	0.82
Cytoplasmic	270	343	0.96
Transmembrane Helix	344	362	0.93
Non-Cytoplasmic	363	369	0.80
Transmembrane Helix	370	391	0.92
Cytoplasmic	392	400	0.83
Transmembrane Helix	401	418	0.96
Non-Cytoplasmic	419	424	0.86
Transmembrane Helix	425	446	0.94
Cytoplasmic	447	455	0.80
Transmembrane Helix	456	478	0.91
Non-Cytoplasmic	479	484	0.80
Transmembrane Helix	485	504	0.95
Cytoplasmic	505	510	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKASEEEEEE VVHSGGGYTS PLMSSLSDAY DDGEEHQKKK KNYGLVQVEE GGQDVISSVE  60
   61 ELLKATTAWR PYPLFIICSM SFLWSLCALS AISPAFTAPA GDECTENCSF YTIQNEFNLT 120
  121 SKFFLVEPAE LTTSIYFLGN LLIGQLFAVV ADRFGRRPII IICLLLTGIV GSLGSLAPNF 180
  181 PLLLVARFIQ GSCYTPLTTV NYVLSGESIP HRSQSLTSIF FGVSWVCGYC FLAPLSVWFN 240
  241 TWRSLQLATA LPNILVAVFL MGTLPESVGY SIEKKNRKAV QKWIKRNELL SCKKLNYDLD 300
  301 MIMEKTEKIA TSSSPTPQNR LTIFEMIREI LSDREITRRI IVETFLWILT FMTYCALSLT 360
  361 STSVGNSDPL VSFLFSGVVE LPAYLFIPIC LTRTKRRPTR FLCHFTGSMA LLTMYFLSND 420
  421 TSLHLIIWLV AKFCASCCYI FCFIYAAELF PTWCRSCCIG VCSTCCNIGA IVAPHIFLID 480
  481 SAAPGAQFLV LAAVGLLCSG LTWCQQETKV