YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01395
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.86
Transmembrane Helix	14	38	0.81
Non-Cytoplasmic	39	81	0.89
Transmembrane Helix	82	105	0.88
Cytoplasmic	106	116	0.73
Transmembrane Helix	117	136	0.92
Non-Cytoplasmic	137	143	0.66
Transmembrane Helix	144	161	0.90
Cytoplasmic	162	182	0.54
Transmembrane Helix	183	205	0.60
Non-Cytoplasmic	206	209	0.53
Transmembrane Helix	210	231	0.82
Cytoplasmic	232	237	0.84
Transmembrane Helix	238	261	0.86
Non-Cytoplasmic	262	268	0.88
Transmembrane Helix	269	288	0.94
Cytoplasmic	289	296	0.92
Transmembrane Helix	297	320	0.91
Non-Cytoplasmic	321	360	0.92
Transmembrane Helix	361	381	0.92
Cytoplasmic	382	388	0.91
Transmembrane Helix	389	406	0.88
Non-Cytoplasmic	407	409	0.48
Transmembrane Helix	410	428	0.71
Cytoplasmic	429	479	0.63
Transmembrane Helix	480	500	0.91
Non-Cytoplasmic	501	757	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTTAARTA SSRVGATTLL TIVVLALAWF VGFASRLFAI VRFESIIHEF DPWFNYRATH  60
   61 HMVQHGFYKF LNWFDERAWY PLGRIVGGTV YPGLMVTSGL IHWILDSLNF HVHIREVCVF 120
  121 LAPTFSGLTA IATYLLTKEL WSPGAGLFAA CFIAISPGYT SRSVAGSYDN EGIAIFALQF 180
  181 TYYLWVKSLK TGSIMWASLC ALSYFYMVSA WGGYVFIINL IPLHALALII MGRYSSRLFV 240
  241 SYTSFYCLAT ILSMQVPFVG FQPVRTSEHM PAFGVFGLLQ IVALMHYARN RITRQQFMTL 300
  301 FVGGLTILGA LSVVVYFALV WGGYVAPFSG RFYSLWDTGY AKIHIPIIAS VSEHQPTTWV 360
  361 SFFFDLHITA AVFPVGLWYC IKKVNDERVF IILYAVSAVY FAGVMVRLML TLTPAVCVLA 420
  421 GIGFSYTFEK YLKDEETKER SSSQSGTTKD EKLYDKAAKN VKSRNANDGD ESGVSSNVRT 480
  481 IISIILVIFL LMFVVHATYV TSNAYSHPSV VLQSSTNNGD RIIMDDFREA YHWLRENTAD 540
  541 DARVMSWWDY GYQIAGMANR TTLVDNNTWN NSHIALVGKA MSSNESAAYE IMTELDVDYI 600
  601 LVIFGGVIGY SGDDINKFLW MVRIAQGEHP KDIREENYFT STGEYSTGAG ASETMLNCLM 660
  661 YKMSYYRFGE TRVGYNQAGG FDRTRGYVIG KKDITLEYIE EAYTTENWLV RIYKRKKLPN 720
  721 RPTVKSEEAT IPIKGKKATQ GKNKKGVIRP APTASKA