YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01381
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	44	0.89
Non-Cytoplasmic	45	52	0.74
Transmembrane Helix	53	74	0.85
Cytoplasmic	75	85	0.86
Transmembrane Helix	86	106	0.94
Non-Cytoplasmic	107	222	0.94
Transmembrane Helix	223	244	0.90
Cytoplasmic	245	262	0.83
Transmembrane Helix	263	282	0.94
Non-Cytoplasmic	283	302	0.87
Transmembrane Helix	303	322	0.91
Cytoplasmic	323	384	0.96
Transmembrane Helix	385	407	0.93
Non-Cytoplasmic	408	417	0.75
Transmembrane Helix	418	439	0.92
Cytoplasmic	440	447	0.85
Transmembrane Helix	448	468	0.90
Non-Cytoplasmic	469	476	0.83
Transmembrane Helix	477	499	0.88
Cytoplasmic	500	513	0.86
Transmembrane Helix	514	535	0.86
Non-Cytoplasmic	536	540	0.76
Transmembrane Helix	541	562	0.88
Cytoplasmic	563	630	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENHVGERTV NIFGKVFPRD AFICRLFYLS FFASFGSLFP LLAVYFKQLG MTAAQAGFLI  60
   61 GSRPIVEFLS GPFWSQFASR FRKQKLLLLF SLGSLVLFTL GIGLVQPVTP YCIVYVPEGN 120
  121 KTCQTMLAPA GKIIRGGALG MLKETLVGGS TRPARQRRQT QSPLVEKIID LSSFDSEEDT 180
  181 VAGIAPEYIT RDRVCNYNED NYGILVSPPH STRVYRQPAV EQAFMLLLIL ICLCEFFSAP 240
  241 ALPLADAATL HSVRDNPAEF GKIRLMASVG WGFAMFIMGI ALDYSDTFRN HPCPAENTTE 300
  301 KNYTLCFVMC VIFMLAAMGL ASKFKFDDDV PAPGEVHGLV MDTREAEVSH VVAEKARARI 360
  361 TQSEGGGGSE NSLLLAMKAL ASMHILLFFV SVVVMGGGAG LVFSFLYWHL QDIGGSPVLF 420
  421 GILSVVNHAS EIITYFYVFK LINKYGHVRV MYLCLAVNFF RFMALSILDN PWMVLPLQIL 480
  481 QGACLATVWS CASSYISLVA PPHAKQHAQY ALQVGYHGIG KGLGSIIGGS VISIIGTRTT 540
  541 FVIYGLICLA TCAGSFGLNK LFKYEGIKYG AGNFEEEDMD IMAPQGVPMA RDGKITDAFN 600
  601 ATTVVNANYG AIAQEDPTQD AYDRYVSTTR