YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7505171
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFESIYIQC LNKFSKYKKF VCHTTCNCPN YKIIGYLLYF LCLCRPINCS LPLSRHDLAF  60
   61 GSFSYYLTMF LYRILVRLLQ FYYFVKFSAI LFLGFAVKGR SLFEKKQREK PNVLEGWDSR 120
  121 YIKLKKVRLH YVQTGSDDKP LMLFIHGYPE FWYSWRFQLK EFADKYRCFK KKITVEKDFE 180
  181 SSGITVEDDP QTGTVEVKKS VIFGFVQIII IGLLLDSVIL IRSFRFGKCV AIDQRGYNLS 240
  241 DKPKHVDNYS IDELTGDIRD VIEGLGYDKA IVVAHDWGGL VAWQFAEQYP EMVDKLICCN 300
  301 IPRPGSFRKR IYTSWSQFRK SWYMFFYQNE KIPEMLCSAD DMKMLELCFR AKEIGIQNNK 360
  361 NFTDEDLEAW KYSFSMNGAS FKYPINYYRN IFNAKKQQAD LVLEAIFTRS NAFHSVQHKK 420
  421 FYNRHSFKIT VTVAKNLEKT RRLELEF

Type	Start	End	Confidence
Cytoplasmic	1	57	0.72
Transmembrane Helix	58	76	0.50
Non-Cytoplasmic	77	81	0.54
Transmembrane Helix	82	102	0.73
Cytoplasmic	103	200	0.68
Transmembrane Helix	201	220	0.66
Non-Cytoplasmic	221	447	0.84