YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7504399
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSSQTEHK NPEREQFKFK FHGQYHGQYH AQAAKKQLTE YYKKQNEILD HFKQDSEQIE  60
   61 ATRRTKIRHQ SLKSNESEFS EVNEHDHLSS LKASTVSIHS KDSLMVRHEE AQNEEIKLTK 120
  121 AAARLAHITL FVNLVLMLAK IFASYLSGSM SIISSMVDSV VDLTSGAVLS ISSRMIRKRD 180
  181 PYQYPRGRTR VEPLSLILIS VIMGMASVQL IISSVRRIHD AAVYGIKDPI NVSWPTIAIM 240
  241 GSTIAVKLTL FIICQKYKSN SSIKVLSLDH RNDCISNSMA LACAWLAFYY TVKDGDEKSG 300
  301 AVVFEKQFDL YYLDPAGAIL VSVYILYTWI RTGYAHFVML SGKSAHPELI NRIVHQCIEH 360
  361 DPRITHIDTV YVYHYGTKFL VEVHIVLDQN MSLKVTHDIA ESLQTGIESL PEIERAFVHC 420
  421 DYEFEHHPHD EHKAV

Type	Start	End	Confidence
Cytoplasmic	1	124	0.99
Transmembrane Helix	125	144	0.93
Non-Cytoplasmic	145	151	0.74
Transmembrane Helix	152	173	0.89
Cytoplasmic	174	193	0.89
Transmembrane Helix	194	213	0.96
Non-Cytoplasmic	214	231	0.92
Transmembrane Helix	232	254	0.89
Cytoplasmic	255	273	0.92
Transmembrane Helix	274	292	0.86
Non-Cytoplasmic	293	310	0.87
Transmembrane Helix	311	330	0.84
Cytoplasmic	331	435	0.94