YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pst-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.98
Transmembrane Helix	39	59	0.91
Non-Cytoplasmic	60	73	0.86
Transmembrane Helix	74	95	0.89
Cytoplasmic	96	103	0.85
Transmembrane Helix	104	125	0.89
Non-Cytoplasmic	126	132	0.76
Transmembrane Helix	133	151	0.76
Cytoplasmic	152	156	0.69
Transmembrane Helix	157	177	0.93
Non-Cytoplasmic	178	186	0.71
Transmembrane Helix	187	206	0.83
Cytoplasmic	207	221	0.77
Transmembrane Helix	222	246	0.84
Non-Cytoplasmic	247	256	0.68
Transmembrane Helix	257	277	0.89
Cytoplasmic	278	283	0.56
Transmembrane Helix	284	305	0.70
Non-Cytoplasmic	306	311	0.67
Transmembrane Helix	312	330	0.89
Cytoplasmic	331	364	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAQIHSDC SVHMLPRHVK EDVEPIHLLG FNIARKPKWL QFVLLSLAIF ILYIGYGYMQ  60
   61 ELIFKLPGMK PFGWTLTLIQ FLIYSGCGYT ECIIWHNTKR MIPWRIYGVI AFFTVATMGL 120
  121 SNASVGYLNY PTQVIFKCCK LIPVLIGGIL IQGKRYGWID IGAAMLMSLG IIMFTLADNK 180
  181 VSPNFDSRGY IMICGALLAD AVIGNIQEKN MKKYGGSSNE MVLYSYGIGS VFIFAFVVLS 240
  241 GEVFSAIPFF LENSWKTFGY ALILSCLGYL GVNVVLTHIK VFGALVAVTV TTLRKALTII 300
  301 LSFMLFSKPF TIEYVYAGSV VMLAIYLNLY SKNKTSWDNM IRRFVARAMG YHDVSVARKD 360
  361 PMTV