YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aqp-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAEEDTLPE RLRFHGVHTN ILARNLIAEF FGTFLLCFIG LSIVFQFHAG GGKTTEWIGV  60
   61 NIGWGFAIMF AVMATARMSG GHLNPAVSLL LWSLGHLKLA WVPLYAIAQT AGAFVASLGM 120
  121 YSYYYEQFNA FDGGNRTILG ATGTAGCFAS YPSPNLGVWG PYIDQCVGTG VLAYFLCVVI 180
  181 DERNQIPKIW HPMFFGFLVM MIGTGFGMNI GYPINPARDL GPRLFSYFIY GPGVFHSPYP 240
  241 NYWLAPAIAP FVGALVGGWF YHFSLGMHNP DIEEADDIFV QQPPKSVEQQ KLLQA

Type	Start	End	Confidence
Cytoplasmic	1	25	0.81
Transmembrane Helix	26	49	0.84
Non-Cytoplasmic	50	56	0.79
Transmembrane Helix	57	81	0.81
Cytoplasmic	82	100	0.69
Transmembrane Helix	101	123	0.88
Non-Cytoplasmic	124	160	0.80
Transmembrane Helix	161	180	0.93
Cytoplasmic	181	188	0.93
Transmembrane Helix	189	212	0.86
Non-Cytoplasmic	213	241	0.93
Transmembrane Helix	242	263	0.93
Cytoplasmic	264	295	0.97