YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01273
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCRTLLGVAF LVVTVLSQGE KDLIQNLPGL LFKANFKSYS GYVDANANGT WKMHYMLTES  60
   61 RSNPDTDPLL VWFNGGPGCS SLGGLFEELG PFYVNFDGQT LYENPYAWNA KANVLYLESP 120
  121 IGVGYSYDTT TPGYFQANDD QSAAQNYQAL TNFFNVAQPK YTNRTFYLSG ESYAGIYIPM 180
  181 LTDLIVQGIN NPNQPFPNKN FQGSAIGNGF MNVAGLLNAL TLWSAYHGRV SEQNWADIKA 240
  241 NCSKGADVDS FDFSQFTTSQ NKIDYVGDGS YCGNLIQPLI SQNALGNEGF DQYNFYQECY 300
  301 DKSVFQAPPP AGGKRHKRSA MQGVSSVQKN LQYQQLGNFQ GTSNLAKNTA TLVNRFSNDN 360
  361 QFGYFCWNED AVSKYLNSDN VQNALNIPQA WKDQKNTWED CRMSIYNNYT LKYNTTNRFF 420
  421 NNIITNLTTD FRFLIYNGDV DTVCNYLGDA KHILQVAKDN GLTSGPRTPW YYSNNQQLAG 480
  481 YVQTYSGKNK NNAMITIDLL TVKGAGHMVP YDRAGPSVQM ISNFVWAPKN VVINYTSQDN 540
  541 FNPNIQLSDL VDSGSSSTVA FFISMFAVLL NIVF

Type	Start	End	Confidence
Signal Peptide	1	19	0.95
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	553	0.98
Transmembrane Helix	554	573	0.61
Cytoplasmic	574	574	0.65