YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01191
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIPRLDEVR RALTAFHFFN TLLALAFPVI RSTSLCDYVF AVEGNEQCEI DSREREILMF  60
   61 LLIILAWKGR KATNWMHYVN NIFLFSKIAG MFLFIRADIL PGIIYILACL IVTVLFPEPV 120
  121 YNGPEQVTYF QGEQLFEELT RNRNTIWVIQ FFTTWSPECR HTSPVFAELS QKFTLPNMKF 180
  181 GKLDIGRWAK EGERFRVNAH PMSRQLPTIC VFKDAKEIAR RPLVNDSRRA VPFVFSEENC 240
  241 VLAFDLLNLY NEQKEKKGAK AKKED

Type	Start	End	Confidence
Cytoplasmic	1	12	0.85
Transmembrane Helix	13	32	0.72
Non-Cytoplasmic	33	76	0.72
Transmembrane Helix	77	95	0.53
Cytoplasmic	96	98	0.37
Transmembrane Helix	99	121	0.69
Non-Cytoplasmic	122	265	0.66