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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pat-3
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSTSLLLL AALLPFALPA SDWKTGEVTG KVVEKSEFPC YSLSRDNYTC SACIQYHESC  60
   61 AWCGAPMFDE KKPYARCDSR AKLMEHGCPN SYIEDPATKL DITEDSKLSD QGQVESEEEA 120
  121 VQIKPQEMYV EIRPKSRVRF NVTYRQAVDY PVDLYYLMDL SYSMKDDKQK LSELGDLLAE 180
  181 RMRTVTKNFR LGFGSFIDKK LMPFIDPRIE KQLSPCPTPC AEPYGFKHQM SLTTNTAKFK 240
  241 AEVDKAEISG NLDAPEGGFD AVVQALACNK TIGWRERARK MIVFSTDAGF HFAGDGRLAG 300
  301 VVEPNDGTCH LDREGYYTET LNQDYPSIAL LHQMIKDRKA NVIFAVTKNN QDLYTQLSNA 360
  361 LPDVSSSVGV LANDSRNIVD LIEKEYLKIS EKIIMVDNAN ASEGLKLTYR SMCLDGTTLK 420
  421 DTNVCEGIRV GDEVQFEVTL ENTHCIDKRD FVLRIGPSGL DETLIVNVKV LCDCDCERQD 480
  481 RIVTNSADCN GGDMVCGVCR CKGGNVGKYC ECNRPGMSTA ALNEKCKRTN ESAICEGRGV 540
  541 CNCGRCECNP RANPEEQISG EFCECDNFNC PRHDRKICAE HGECNCGKCI CAPGWTGRAC 600
  601 ECPISTDSCL SANGKICNGK GECICGRCRC FDSPDGNRYS GAKCEICPTC PTKCVEYKNC 660
  661 VMCQQWQTGP LNETACDQCE FKVIPVEELP NLNETTPCQF VDPADDCTFY YLYYYDEATD 720
  721 NATVWVRKHK DCPPPVPVLA IVLGVIAGIV ILGILLLLLW KLLTVLHDRS EYATFNNERL 780
  781 MAKWDTNENP IYKQATTTFK NPVYAGKAN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle