YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPITANSSK CATEDQMILQ TSLLLRINVI IMTIVAIITF ILTYKALFIL KIRPIFHSST  60
   61 KILLYTSLLF VNVHAVIFMV IQNTALIRSF TLSDKPCEIM RTTLECRFQN HVLIFGIAGV 120
  121 NFNQFGLTVD RLLATIIPQS YSHMGALPGV ILSVLVVACS IAAPLIIAIG DPYDDIVPNC 180
  181 FFFPEHSAPR ANIFLVTLST LVITSIFLNF IIIYANKKLE KGCRTRFYVT QRYQKREALI 240
  241 STRIISYIAA SQFLGLTLYS TMVLTLRLHK SMIPISIYHN MVWWAYTVPF AAVSLPALLI 300
  301 YRINQVGSNR KRVINRITAK VETQEEHMKS LKELWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.69
Transmembrane Helix	24	48	0.84
Cytoplasmic	49	61	0.66
Transmembrane Helix	62	82	0.90
Non-Cytoplasmic	83	110	0.65
Transmembrane Helix	111	129	0.65
Cytoplasmic	130	145	0.81
Transmembrane Helix	146	169	0.90
Non-Cytoplasmic	170	190	0.96
Transmembrane Helix	191	214	0.91
Cytoplasmic	215	243	0.91
Transmembrane Helix	244	263	0.92
Non-Cytoplasmic	264	281	0.87
Transmembrane Helix	282	303	0.93
Cytoplasmic	304	336	0.98