YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE00980
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANHDFCTKT MWALSVPLGV LLILFIALTA YATYSFHIFV PIAPNNEIDC AIMFNKSSED  60
   61 YLTYIENRTL LETTHNDRNC FQIRRRRYLP ADLPKSMSGF HNMFFIRVVS KDYDFVEEVL 120
  121 AMMHSPIHFF CFVLDINSEP LFKERMFRLG DCMVNVLVPR ELFNTSTAHG TLNAHRRCLR 180
  181 EIDEFDWKHA VITAEHDIPL HSTKFLSRRS RRLRDMVEMN GIHFKEETLA NANPNDTSSQ 240
  241 LFQVSRNWLQ HLCSVATISH SQHKVLYDYL LKTPDFDLPN DQHREISVVE QKCDTMKYDV 300
  301 DGSCLYAMED FSAIRNTTRL FIRADPHYDF GFVQCVHEVV FERTFFDPIS NKNANNYLYG 360
  361 SRVNLIDDYR N

Type	Start	End	Confidence
Signal Peptide	1	32	0.52
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	371	0.97