YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTDEGEYSG DTDHGGSTMQ KMSPNTRQNF RQNVNVVVCL SAAITLLVFN LIGAGIFYLA  60
   61 ETQNSSESLN ENSEVSKCLH NLPIGGKITA EMKSKLGKCL TKSSRIDGFG KAIFFSWTLY 120
  121 STVGYGSLYP HSTLGRYLTI FYSLLMIPVF IAFKFEFGTF LAHFLVVVSN RTRLAVKKAY 180
  181 YKLSQNPENA ETPSNSLQHD YLIFLSSLLL CSISLLSSSA LFSSIENISY LSSVYFGIIT 240
  241 MFLIGIGDIV PTNLVWFSGY CMLFLISDVL SNQIFYFCQA RVRYFFHILA RKILLLREED 300
  301 DGFQLETTVS LQHIPIINSQ CMPSLVLDCE KEELDNDEKL ISSLTST

Type	Start	End	Confidence
Cytoplasmic	1	35	0.91
Transmembrane Helix	36	59	0.89
Non-Cytoplasmic	60	111	0.90
Transmembrane Helix	112	129	0.86
Cytoplasmic	130	137	0.69
Transmembrane Helix	138	158	0.86
Non-Cytoplasmic	159	200	0.87
Transmembrane Helix	201	222	0.91
Cytoplasmic	223	229	0.74
Transmembrane Helix	230	250	0.89
Non-Cytoplasmic	251	255	0.71
Transmembrane Helix	256	277	0.83
Cytoplasmic	278	347	0.91