YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE00561
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRAVSTSFG TARAASAVAK KNMPNIVLVD AVRTPFVVSG TVFKDLMAVD LQKEAIKALV  60
   61 EKTKLPYEQL DHIICGTVIQ ECKTSNIARE AALLAGVPDK IPAHTVTLAC ISSNVAMTTG 120
  121 MGMLATGNAN AIIAGGVELL SDVPIRYNRN ARKAMLGMNK AKDVPSKLKI GGQIVKNLLS 180
  181 PELPAVAEFS TGETMGHSGD RLAAAFNVSR REQDEFAIRS HTLASEAAKN GKFTDVVPVF 240
  241 LDGKKPKTIK EDNGIRVSTL EKLSSLKPAF VKPHGTVTAA NASYLTDGAS AALIMTEEYA 300
  301 LANGYKPKAY LRDYLYVAQD PKDQLLLSPA YVIPKLLDKA GLTLKDVDVF EIHEAFAGQV 360
  361 LANLNAMDSD YFCKEQMKRS GKFGRVPMDK LNLWGGSLSI GHPFGATGVR LATHSAHRLK 420
  421 EEKGQYAVIA ACAAGGHGVG MLIEAYGK

Type	Start	End	Confidence
Signal Peptide	1	17	0.92
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	448	0.95