YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE00504
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRISSEQI HISLQLQIEM LVVGLSGGVA TGKSTVSSVF RAHGVPIIDA DQVARQVVVP  60
   61 GTSTYNRLRK EFGDEYFDDE HGGVLRRDKL GKLIFSNPEK RKALNGITHP AIRWEMFKQF 120
  121 LTLLITGTKY IVFDTPLLFE SGYDKWIGTT IVVWCDFEQE VERMVTRDNI SRADAESRIH 180
  181 AQMDIEEKKK RAKIVIDNNG NIDELREKVK HVIAQLDKSW KPYIFRVAFG IILGVVPYYF 240
  241 FKYIRS

Type	Start	End	Confidence
Cytoplasmic	1	222	0.60
Transmembrane Helix	223	241	0.90
Non-Cytoplasmic	242	246	0.57