YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE00457
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLAVYESAQ QQTLEDKVQN LVDLTSRQSI VKFNMDKWKT LVRMQPRNYS MIVMFTALSP  60
   61 GVQCPICKPA YDEFMIVANS HRYTSSEGDR RKVFFGIVDY EDAPQIFQQM NLNTAPILYH 120
  121 FGPKLGAKKR PEQMDFQRQG FDADAIGRFV ADQTEVHVRV IRPPNYTAPV VIALFVALLL 180
  181 GMLYMKRNSL DFLFNRTVWG FVCLAITFIF MSGQMWNHIR GPPFMITNPN TKEPSFIHGS 240
  241 TQFQLIAETY IVGLLYALIA IGFICVNEAA DQSNSKDRKN AGKKLNPLSL LNIPTNTLAI 300
  301 AGLVCICVFF SFLLSVFRSK YRGYPYSFLF A

Type	Start	End	Confidence
Non-Cytoplasmic	1	165	0.74
Transmembrane Helix	166	185	0.94
Cytoplasmic	186	196	0.64
Transmembrane Helix	197	216	0.93
Non-Cytoplasmic	217	245	0.80
Transmembrane Helix	246	267	0.86
Cytoplasmic	268	289	0.72
Transmembrane Helix	290	316	0.83
Non-Cytoplasmic	317	331	0.77