YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|102499
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSTFKRHL PIRRLFSSNK FDLIVIGAGS GGLSCSKRAA DLGANVALID AVEPTPHGHS  60
   61 WGIGGTCANV GCIPKKALNS KFQLKHADKY GWNGIDQEKI KHDWNVLSKN VNDRVKANNW 120
  121 IYRVQLNQKK INYFNAYAEF VDKDKIVITG TDKNKTKNFL SAPNVVISTG LRPKYPNIPG 180
  181 AELGITSDDL FTLASVPGKT LIVGGGYVAL ECAGFLSAFN QNVEVLVRSI PLKGFDRDCV 240
  241 HFVMEHLKTT GVKVKEHVEV ERVEAVGSKK KVTFTGNGGV EEYDTVIWAA GRVPNLKSLN 300
  301 LDNAGVRTDK RSGKILADEF DRASCNGVYA VGDIVQDRQE LTPLAIQSGK LLADRLFSNS 360
  361 KQIVRFDGVA TTVFTPLELS TVGLTEEEAI QKHGEDSIEV FHSHFTPFEY VVPQNKDSGF 420
  421 CYVKAVCTRD ESQKILGLHF VGPNAAEVIQ GYAVAFRVGI SMSDLQNTIA IHPCSSEEFV 480
  481 KLHITKRSGQ DPRTQGCCG

Type	Start	End	Confidence
Signal Peptide	1	39	0.78
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	499	0.99