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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ced-11
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.39
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDETDPVPDM SLLPDTVPVV VSGDGSAAGI QLCPALILGS PQALPGAIKH IYSRLAAAAS  60
   61 EVDQGVPDLI ISLISHGNSL STKYMSSVEN GLKSFLIGCG TWLISSGEVN DPMSRVASGA 120
  121 LKNVLPQLEH QAEVLHILVN SDDMIASDTT NSKSVVDTSL NTLLLICRKE PNDSYETVAS 180
  181 SIAKLRAATA VKLAHPPPAL LIGVPSEPMS PSTYGNSAAI LLSPSNDKRP FPVAIFAGAS 240
  241 KESLIELLFF VEHGIPVIIL QDSCELCAIL HSSHLLLETS NFDNDKFISW LRSQLYPLGL 300
  301 ADCYTLITKL LVSSNSGDVQ LIEFIDSSQL SELSSVVVDR CLECYATTGE ERQVLLLAAK 360
  361 LNSPSVLSSM DVAAQLDEEL LTMILCECIT KDDQLHFLSS VLQLSPPIRV TSNMLIRMMH 420
  421 HADEHFFTTI VLCQCMGYSY IPSEIDPRFA NDIQKLVKKL SFGVDNLFDP NVFCNDSSHR 480
  481 DKHESIRILA IWSLLLHRPG IVKCLAAFAD EPVAFSMVLS RIARSLGHES HDWHFYEKSL 540
  541 NTLSDSLSGS ATTLFDTVFS TSPAKAYQLL CQPMEYFYGF NMTQLAFHCN AREIIAHECC 600
  601 QRWVHRKLYG NLQAKNFPIF LPKWAKICIS AVLIIPVKFW MLVRPRERTK QDTVSPTVAL 660
  661 LDVGKFPQKQ RAISTYSVIS SRSEALTALT APLSTAFGFN SALNGAESAT PQSMVFPLNI 720
  721 EEIDKDPRPF GKKNRIRRAH APTLSTFYST PIVKYWLSLL FRIVFICCLA YSVVLPGCGS 780
  781 NLWDTGMWVW SFFWWIENCF VLTARARKIP LSLMPWRVFD VFAFFVFLIL LLVMKVFPVT 840
  841 PVLEVLGIDS IYSAKVVSAF FVLYVSYSTL FTYIPLSDIF GPMIVRVKLM LLRDFTNFLF 900
  901 MIALVMLSSA VAIQAVVFPD RPVTMEVFRK TLSWIWLSLF TTDLSNLSES ETCRKSFLGA 960
  961 PKRYCSSVGQ YANPSCPSQS LPAYLIVIEY FVILKLLLWP ILFAFFSKTA KNVDDEADKI1020
 1021 WRFQLYSLAE DFRLRPPLPP PLTIFCLICS ACCRFSNSFS GFFSDFDHPD FEARDKCRTT1080
 1081 WKFGSIYRNP SVPFKRNEFV NSFWRKLSME QWKNTQQKAK ISANKSELQE LHNIHNHIRM1140
 1141 MTLRDSYENS GTRKASELQF FEKYPESNIL KISVNMVSKP WTVLVPRYNP PFYCKPAEDF1200
 1201 PSDVQKYVDI ATEQNVGELK RIWRSRQAND VTSSNDKCWK LSAAGFPLNP NGRTGMAGRG1260
 1261 NHPRFGANRR CYYVVLSGGV EAKCQVLVDS QKNIPNEWHL ENSSKDEHLT SILKMIGISD1320
 1321 SDAHMFSMRR LDSSIITADK RIPSNDTSPA HLASEVAENE NDTDNAWTEH DVWAISLRER1380
 1381 RIITTIIGYS WLPTSAIRGT VLPWQADLVF RAKTIYGL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle