YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ubxn-4
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQWFGGNVAT AIQISRKNKA LLIVYITTDS EDGQIFDGFW QHIDSSNLLC AVVGIKLKAG  60
   61 ETSAQQFADI YPTPILPAAY LIDQNGKPLE VITPLVGKTY DQFRAKFDKA TAQFVNGMPT 120
  121 AAANQLSTPS PSPAPVQVPA STDAPIPAPT PVTAPIQSSS TSQEMTRELA EKVARAKALL 180
  181 EQKKQKDAEK KREADKHVKE EMTKAREAKQ ERDAEALVKA AKQRKMEKLA AESDKKRILA 240
  241 QIKADREAAQ KKFGKLVNTE NASENTEKKQ ETTVGKAVPS DRCRLQVRLP DGSTFVEEFP 300
  301 SNDVLNSLVE IIRQKPSIAG TTFEIQQPYP RRIFTNDDYS KTFLENQLTP STALVVIQKS 360
  361 SGSSSNYGSF SLSTQTVSFV TWVLYPLTAF WNIFCGMIGW NSTGKQQDSK SKKNDGPSTS 420
  421 GQSGSQPQRR GMPRSAEVRR RGNVAGLENP NEDDPEERAS FNGNSTQFM

Type	Start	End	Confidence
Non-Cytoplasmic	1	378	0.98
Transmembrane Helix	379	401	0.75
Cytoplasmic	402	469	0.81