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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-3
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIRIFFSIF LLNHLIFFHL FNFTHQFSEE TIKFSVSEDA KLNTIIGHLE AEIGYTYRLS  60
   61 RGNSKIKFDE QTLELSVSSP LDRESENAID MLIITSPPSI IHILIDVLDV NDNSPIFPID 120
  121 VQRVEIPETA PIGWRVQISG ATDPDEGKNG TIGKYELVDS LATVDTMSPF GIVQSDGFLF 180
  181 LEVTGKLDRE TRDLYSMRLT AIDQGVPELS SSCHLNILIL DINDNPPNFG IRSLTLNWNG 240
  241 LPNTKLFSLN ATDLDSNENS LLTYRILPSG PTSEMFSISD ENILVTQNNT ECLQRCEFVV 300
  301 EARDSGVPPL STTLNIVVNM EYGNEHEPNI NIRFYPSDYP FIIVQPEDVN GKTLAILSIT 360
  361 DSDGPLGANS TIWIENGNEQ SIFSLISRQS INILTVKHVE NANQEQYILE FRANDGQSPA 420
  421 DRITRKELKI FFKKYVKSTQ IHVERESHVT VEKDTVPGSF VAHVETNCTD MCSFELANSD 480
  481 VFKIDPFNGI IVTSSILPEG VTSYHLPIRI HLPPPSTQLV EADVFVKVIQ ESVPKNLIRS 540
  541 SESPIHLKRA YTFTTWQDVS LGTVIGRLPK AQIYSTIDTV SELGVFPDGS VFVGKTITSD 600
  601 FVTLPVTLVN RNTTQTSIIT LIVKPLNQHS PICQITEIHV LENAPIGTIF GRIQARDEDS 660
  661 GLSGVVSYKI LTKSDDYDGI FHLDSTSGSL RSLKAFDAEK KRSYTFEYEA KDLGTPSKTT 720
  721 NCPATIFIED VNDNVPKFGS RYYTATISGK SNETVAIVQA NDNDVDVKNQ KLQYHLLNYH 780
  781 DFFQLDKETG KVTTIQDVPM TWQRLNISIS AVNMDSERFL QSKTFLLVTV TSSSKLAVQL 840
  841 NSGNLIRIFK NDKIGEKVGH LDIASSETVY WSTLDPRLHV DSSGNIILIR RNAKQASTGF 900
  901 DIILTSENGE KTEKVNFEVE FVDSERSEDV EKVMDIVLNE NTTEVSNLMN DWKNWKISRV 960
  961 ILENANNSGN NTFFLEHKKL WRTKNATVSN AYIILESEDQ EGSPKSFKLL HVTTSPSPSS1020
 1021 ESSCISPAHL ISPPSTVPLP SNCSNVKLQN LKTSLQIHEN NLLIPTQSEL INHVDLVSTQ1080
 1081 NSDMKPFMMT LIKDYLSEDV RFSTNNVLML LSSIHPIGTS FGRVTAESGY RIRYYIVGTD1140
 1141 KISIDADTGE LILKERFYRN LNDILIVAVI PKGIAKAKIT IEVIEDRLIL PQSNFFIPSP1200
 1201 PSFNSKSKIG KIPIDRDDVT IDVIDEHFYV RNFEIFVKRH FIPNSNFYDL KGTVKKGKLS1260
 1261 APISVTLFFG EKMKSREIRE NELMFEIEEN SPIGTVVGVV PNSDTTKYRL VDPTCGLLID1320
 1321 QEGIIRTTTV FDRENTSLLK TKMIEPSENR IWNLLIFIAD VNDNKPKILN APGRIIVYDD1380
 1381 LNYKLEWEDL DAIASDVSFS IVDGDVFGNL EIEDSGVISL NSIPNESFNA TIRIYDNRPP1440
 1441 FKVHFDDVTI EFQVTQKLRA VTCEDAEFWM FFGNEDVGML IASEIVTWRI VPQIGSDSFK1500
 1501 IDPITGIIQS TPNTKPTSDI AKLKIQAISY DGERVGFCDV KIHIDKAAFV ENVVLSNGTF1560
 1561 EFNISETADR FTEVGKIVIL GAGLEGSVFR IQDNDYNFTI SPFDGTIFTN SPLDFENIKT1620
 1621 YRFNITAGKS TSQVIIHVTD ENDEAPRFIT GDVVNLKVLE ELDTVSYPLI IGSSIAEDLD1680
 1681 EGQNGLVTYS ILSGNTSLFA VNSTTGDILS LIPLDREESS LHELLIEAKD AGIPSLSATS1740
 1741 KILIHVGDIN DNTPEFELSS YFIKISENSK IGSKIIRILA TDKDKDAELQ YSLESNDEIT1800
 1801 IPFRINVATG WITVAGKVNR EENEEFRFFV KVTDGEKSSK VIVEIHVEDF NDNHPMINDR1860
 1861 NSDIFVPDPT RSVEIIHVIN VHDLDKSDHL KFSLNNSNLN LSENGEITLK SPLQTAVPVR1920
 1921 VTVSDDAGHV AFMEYLFHPH SRKHFPVFVE KLDTVSVREH DEQELAVFKA NGDSIRYSIV1980
 1981 SRCSDHLEME KSTGILKTKS SLDAEEYSEC LVFIIATTYF DNKPLSTITK ATIKIVDIND2040
 2041 NSPRFDQQLY RFNVTENSGP KLIGHVIARD IDRSSRVFYE IVGGDANHEF MVTESGQIES2100
 2101 VRDLDRETKS EYHLIVEAID DGKPRRRGNT TVIVTVLDED DNAPRFSRIF HVEVPEDVRI2160
 2161 GEPVIQLSAS DADEHSNHRF ELDGGGEGIP FRVDENTGMV FVNDSLDFEK KQSYRIKVKL2220
 2221 TDGAWLIETS LFVNVKDVND NAPIFEKPEY LFISEENSAE IGQFHASDMD SENNGKIRYS2280
 2281 VTSPYFKIEP STGVLSRFRQ QLPQPLMSLK VTATDHGVPR LQKTVLAHLV DKSSFGKIKQ2340
 2341 RRIRETTKVG DVIGKKIDSG ATIFPLDVAT VTRDGDVVLK KNATQFWILE NDTIYEFVKT2400
 2401 DAMESTKNEN ITLNITSDIS MNSDNFKVLR NGSLIVFGFS GNQAHLKIQC DDGFWPKQDR2460
 2461 KIINLVVNNL DADRNSFPLA RQPTIRKSMS LPKTMILNIP FDSPTGTIIW KNLENAVQYM2520
 2521 ENQKNVNFSN GSKNLILKTP LEETMQIDIF GQNFERSALT ITPNRSLMAC PVFQKNFYFF2580
 2581 ESVANLDSKH PTEIHNFGWS SDEIKGCQID IFDKTHLFYQ NGSSLIFLKP LLPGTYQFSL2640
 2641 QIKSQSDSKI RSACHVVVTV IPPTNLTTWN IPSVIFATRN YNIPNLFHLP SGYSLSSDQR2700
 2701 TFSLIGSGTG KNISKLSSGV YQVNVVGKDE KKEIVRILLD DVADDVTSKD IEYHVVSSTL2760
 2761 SNLKIPTPID VECFPRTEEN LYEITKDCRL LFNSDVINTT IPVVTSPANS TWNLRIINES2820
 2821 PETVKSLENN AVSLEIITQK SSIPRLITDL RVTYSDMKIY CLGTWQTSED IKYHITFVIV2880
 2881 DRNGVVIEES EARQTLTSFL KKHRPGYLDF VDFDKDPCDG VTCIQKNSTC QPTLVGDSAS2940
 2941 RLVSRSSSVI FDLPLKKLTA RCFCSSGIDC YDDTTNETIQ KTQKINVITT CDDIDCGPRG3000
 3001 KCFMEESSQP ICRCGQGFES MYSCERADDV FSMSTGGSVE ISVRNGTSHL LKCSENCDGR3060
 3061 DIQKIEFDFR TVQLEKSELF RVDFGKQVAL IELIGGSLTF SITDAYARPI ETRIEKRVND3120
 3121 GRWHRLLFQM SEDGRRISIQ VNGRGKEVKS RVPLQMLFTA KKIQLMTPAA FCFRRLLAQN3180
 3181 QFVHPILNRN KFFEISSTGT SRNECQFDSI QSGSGGFRLF SNFSNTTTLI LLITLALISL3240
 3241 IGFSVCLLAI RRRWRQKSPG DQKQTERSNG WTGHVMPRRR GHINRSMVKS PDDDTYDVAT3300
 3301 VYGMKSTSTD DITHIYTSSS SRRYQPPTAP SYRRDGHINM AYL

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