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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lin-12
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIPTICFLF LLISLSKSLH IGSCLGLICG RNGHCHAGPV NGTQTSYWCR CDEGFGGEYC  60
   61 EQQCDVSKCG ADEKCVFDKD YRMETCVCKD CDINGNSLLK PSCPSGYGGD DCKTQGWCYP 120
  121 SVCMNGGQCI GAGNRAKCAC PDGFKGERCE LDVNECEENK NACGNRSTCM NTLGTYICVC 180
  181 PQGFLPPDCL KPGNTSTVEF KQPVCFLEIS ADHPDGRSMY CQNGGFCDKA SSKCQCPPGY 240
  241 HGSTCELLEK EDSCASNPCS HGVCISFSGG FQCICDDGYS GSYCQEGKDN CVNNKCEAGS 300
  301 KCINGVNSYF CDCPPERTGP YCEKMDCSAI PDICNHGTCI DSPLSEKAFE CQCEPGYEGI 360
  361 LCEQDKNECL SENMCLNNGT CVNLPGSFRC DCARGFGGKW CDEPLNMCQD FHCENDGTCM 420
  421 HTSDHSPVCQ CKNGFIGKRC EKECPIGFGG VRCDLRLEIG ICSRQGGKCF NGGKCLSGFC 480
  481 VCPPDFTGNQ CEVNRKNGKS SLSENLCLSD PCMNNATCID VDAHIGYACI CKQGFEGDIC 540
  541 ERHKDLCLEN PCSNGGVCHQ HRESFSCDCP PGFYGNGCEQ EKMFRCLKST CQNGGVCINE 600
  601 EEKGRKCECS YGFSGARCEE KINLTGFTEK DSLLRSVCEK RKCSERANDG NCDADCNYAA 660
  661 CKFDGGDCSG KREPFSKCRY GNMCADFFAN GVCNQACNNE ECLYDGMDCL PAVVRCPVKI 720
  721 REHCASRFAN GICDPECNTN GCGFDGGDCD NETNATIITN IRITVQMDPK EFQVTGGQSL 780
  781 MEISSALRVT VRIQRDEEGP LVFQWNGESE MDRVKMNERQ LTEQHVLSTS ISRKIKRSAT 840
  841 NIGVVVYLEV QENCDTGKCL YKDAQSVVDS ISARLAKKGI DSFGIPISEA LVAEPRKSGN 900
  901 NTGFLSWNAL LLIGAGCLIV MVVLMLGALP GNRTRKRRMI NASVWMPPME NEEKNRKNHQ 960
  961 SITSSQHSLL EASYDGYIKR QRNELQHYSL YPNPQGYGNG NDFLGDFNHT NLQIPTEPEP1020
 1021 ESPIKLHTEA AGSYAITEPI TRESVNIIDP RHNRTVLHWI ASNSSAEKSE DLIVHEAKEC1080
 1081 IAAGADVNAM DCDENTPLML AVLARRRRLV AYLMKAGADP TIYNKSERSA LHQAAANRDF1140
 1141 GMMVYMLNST KLKGDIEELD RNGMTALMIV AHNEGRDQVA SAKLLVEKGA KVDYDGAARK1200
 1201 DSEKYKGRTA LHYAAQVSNM PIVKYLVGEK GSNKDKQDED GKTPIMLAAQ EGRIEVVMYL1260
 1261 IQQGASVEAV DATDHTARQL AQANNHHNIV DIFDRCRPER EYSMDLHIQH THQPQPSRKV1320
 1321 TRAPKKQTSR SKKESASNSR DSTHLTPPPS DGSTSTPSPQ HFMNTTHTTP TSLNYLSPEY1380
 1381 QTEAGSSEAF QPQCGAFGNG EMWYTRASTS YTQMQNEPMT RYSEPAHYF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle