YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE00212
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLFDPGFV ILREDQSVKL FNIILVMSQV FGGLAVLLVT IWMSKFESGF AWNEDPDKEF  60
   61 NYHPTFMIMG MVFLFGEALL VYRVFRNERK KFSKTLHVIL HSCVLVFMLM ALKAVFDYHN 120
  121 LHKDPSGNPA PIVNLVSLHS WIGLSVVILY FAQYIVGFIT YFFPGMPIPI RQLVMPFHQM 180
  181 FGVLIFIFVS ITVAMGISER AAWKHTCWTK EGQMCAQQAT SSFVGVFTFL YTVCVLLLVL 240
  241 NPRWKRQSLP EEEGLHHLTS SHSMSD

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	43	0.95
Non-Cytoplasmic	44	62	0.94
Transmembrane Helix	63	85	0.90
Cytoplasmic	86	95	0.90
Transmembrane Helix	96	116	0.92
Non-Cytoplasmic	117	140	0.89
Transmembrane Helix	141	163	0.89
Cytoplasmic	164	176	0.84
Transmembrane Helix	177	198	0.90
Non-Cytoplasmic	199	218	0.90
Transmembrane Helix	219	240	0.92
Cytoplasmic	241	266	0.97