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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pat-2
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREGSFPRRI GLLLGLLGLL AGVATFNIDT KNVVVHHMAG NYFGYSLDFY HEQKGMPVLV  60
   61 VGAPEAESNN PNLAGIRRPG AVYACSVNRA TCREVHVDKM KGNLKKLNGS HLVPIEEKSH 120
  121 QFFGATVRSN DKHDKIVVCA PKYTYFYSKF EVIEPVGTCF YAENGFDNAE EFSSCKQEPA 180
  181 RHGRHRLGYG QCGFSAAVPG KKNQNRVFIG APGVWYWQGA MFSQNIKNQT DRPNTEYGSK 240
  241 EYDHDMMGYS TATGDFDGDG IDDIVAGVPR GNDLHGKLVL YTSKLKMMIN LTDEVSTQHG 300
  301 QYCGGSVAVA DVNKDGRDDI IMGCPFYTDY GSVKDAKTQE RKPQYDVGKV IVMLQTAPGV 360
  361 FGKQIAVVGD DQWGRFGHAV AAAGDLNLDG YNDVIVGAPY AGKNKQGAVY VIHGSKDGVR 420
  421 ELPTQKIEGA NIGHGNIKSF GFSLTGNEDV DGNGMPDIAV GAWKSGNAAV LLTKPVVTVT 480
  481 GQTEPESALI SVEDKNCDVD GKLGKQACKH INTCFKYEGK GDTPNDLEFD LRFNLDDHSP 540
  541 EPRAYFLQKD VKSDRSIKVA QGSKTRDHPS SIEQRVRLEK GRQKCFRHRF FASSTMKDKL 600
  601 SPIHWSVNYT YVESKTGKLR GDKLEPAIDT TVPLSFQNKI NIANNCGKDD LCVPDLKVTA 660
  661 VADREKFLLG TQDNTMLINV TVQNGGEDSY ETKLYFDVPQ GFEYGGIESV GGDGSKSAPA 720
  721 CSPTSDEPDS DGKWTFACDL GNPLPANKVV SSVVRVTASS DKPPLAPISI NAHVNSSNDE 780
  781 EAHTVADNKV TFTIPVDFKN QLSLNGRSNP EQVDFSMTNK TRVDAFDDNE IGPVVSHLYQ 840
  841 ISNRGPSEVD SATLDIFWPS FSTEGGHLLY IITEPVVNPP NKGRCRVKQL QNVNPLNLRI 900
  901 TNEHVPTEPP VAKTPNEYSR EEDDESYEDE TTTQSQSTRH QSTQHQTHHQ SGPVHVYEKD 960
  961 EEKIRQNTGN WQYVEDKKKK GDYEYIPDDQ EYDGDDFEEE DDEDFDRAGS KRVKRNPTPK1020
 1021 KKKKGGEHRG EPRSDKARFS DLREAVKLSK EAGGVVDYKG PLSRASVDCN SLRCTHIECD1080
 1081 IYDLKEDEFV LVEIFSRLYT NTLVDEKNPG GDISSLALAR VTSTKYNLPH KPTLITAVST1140
 1141 NMNAIASEEG RDLPWWLYLL AILIGLAILI LLILLLWRCG FFKRNRPPTE HAELRADRQP1200
 1201 NAQYADSQSR YTSQDQYNQG RHGQML

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle