YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC409.08
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.99
Transmembrane Helix	101	122	0.93
Non-Cytoplasmic	123	137	0.90
Transmembrane Helix	138	158	0.94
Cytoplasmic	159	167	0.82
Transmembrane Helix	168	187	0.95
Non-Cytoplasmic	188	193	0.76
Transmembrane Helix	194	215	0.94
Cytoplasmic	216	225	0.83
Transmembrane Helix	226	249	0.89
Non-Cytoplasmic	250	263	0.78
Transmembrane Helix	264	285	0.88
Cytoplasmic	286	330	0.92
Transmembrane Helix	331	352	0.88
Non-Cytoplasmic	353	367	0.93
Transmembrane Helix	368	390	0.92
Cytoplasmic	391	410	0.92
Transmembrane Helix	411	430	0.97
Non-Cytoplasmic	431	436	0.79
Transmembrane Helix	437	459	0.86
Cytoplasmic	460	473	0.76
Transmembrane Helix	474	493	0.82
Non-Cytoplasmic	494	503	0.76
Transmembrane Helix	504	526	0.94
Cytoplasmic	527	539	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLEKTNTHD STATVEDQEA TDNPMHLTQS RIQSETLFPN GVDLNYPFTT TRGPPDVAEY  60
   61 NLETAEGVYR DPTINEGEEE LVTWELNDPE NPHNWSRLWK WYITIVNSLL VVCSAFGSSV 120
  121 IAGDLEDVSR DLKVGPEVAN LSCSLMVVGF GIGPLVISPL SEMIGRRIVY LVTLMIYIVL 180
  181 QIPCALAPNI ACLLIVRFFC GCFGCTPLTL AGGVISDVWE TRERGLAIAF FAAGPYAGPT 240
  241 LGPLVGGWIG VGTGDFRWIF WVNMIYMFVM YLTLLPVPET YAPVLLRWRA QRIRKETGRQ 300
  301 VFTAQEKQML SFKEIVQVNL TRPLTLLLTE PILVCISGYI ALIYALLYGY FFAYPNVFVK 360
  361 GKGYNEGITG LMFIPILVGV VGALSTTPFL EKQYMAKLDA NNGKSVPEWR LVGMCIASPF 420
  421 IPTGLLIFAW TSFPRLIWIG PAFSGAPFGY GMVLFYFSAN NYLIDVYQNY CASALAAKTM 480
  481 VRSAGGAAFP LFIDYMMDGM TRQWAFFLLG MVAVAAIPIP FTFYLFGDKI RARSKAAIV