YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	alg12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	25	0.87
Non-Cytoplasmic	26	69	0.86
Transmembrane Helix	70	92	0.84
Cytoplasmic	93	112	0.81
Transmembrane Helix	113	134	0.91
Non-Cytoplasmic	135	165	0.88
Transmembrane Helix	166	190	0.86
Cytoplasmic	191	199	0.80
Transmembrane Helix	200	218	0.96
Non-Cytoplasmic	219	255	0.89
Transmembrane Helix	256	276	0.92
Cytoplasmic	277	282	0.79
Transmembrane Helix	283	299	0.96
Non-Cytoplasmic	300	306	0.75
Transmembrane Helix	307	327	0.91
Cytoplasmic	328	339	0.79
Transmembrane Helix	340	360	0.94
Non-Cytoplasmic	361	546	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKESICWY LANILLVTCI GYYSYKTPFT KVEESFAMQA IHDIQTYRWD LSKYDHLEFP  60
   61 GAVKRSFIPS LFIAVLSYIP SWFVNPLLAA RWTIGYLSWE SMNSVSCSIS KRFGTLSGAL 120
  121 FILFSCAQFH LVYYMSRPLS NIFGLIATNH SLSLLLKNNY YGSISILVFA AAIVRSEIAL 180
  181 LLMCLILPLL LQRRITLSKL LLVGISSSLA AVGASFLIDS YFWGAWCWPE LEAFLFNVVE 240
  241 GKSSDWGTSP FYYYFVRLPW LFLNPTTLLF LLISFVYIKP ARLLIYVPLF FIFVYSFLGH 300
  301 KEWRFIIYSI PWFNAASAIG ASLCFNASKF GKKIFEILRL MFFSGIIFGF IGSSFLLYVF 360
  361 QYAYPGGLAL TRLYEIENHP QVSVHMDVYP CMTGITRFSQ LPSWYYDKTE DPKMLSNSLF 420
  421 ISQFDYLITE DPESYNDTFD VIESVNSNTK IPILPKWLSN HIPREISIRN PAQPVYILAN 480
  481 KKARATKPAA VDDYSSFIGH KVDEIKLWPP IYRVVSPDTL LTRDYREDRL NFFIDKDRIL 540
  541 THITQG