YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YI7B_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	28	0.85
Non-Cytoplasmic	29	35	0.73
Transmembrane Helix	36	57	0.88
Cytoplasmic	58	63	0.92
Transmembrane Helix	64	86	0.91
Non-Cytoplasmic	87	106	0.89
Transmembrane Helix	107	128	0.89
Cytoplasmic	129	154	0.89
Transmembrane Helix	155	177	0.91
Non-Cytoplasmic	178	185	0.73
Transmembrane Helix	186	205	0.94
Cytoplasmic	206	212	0.95
Transmembrane Helix	213	236	0.90
Non-Cytoplasmic	237	249	0.82
Transmembrane Helix	250	268	0.91
Cytoplasmic	269	278	0.82
Transmembrane Helix	279	302	0.91
Non-Cytoplasmic	303	311	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLTQSYFCI MSMLGTLARL GLTALNTYPG APFSGLLWVQ FVGCVIMGFC QTESVFFPRP  60
   61 KHNATFLLAI TTGFCGSLTT FSSWMLQMFT GMANLDPFER RGRGYSFLSV VSDFMVTMCI 120
  121 AMSSLIWGKQ IGKTTGQWRI GKVAFAWPIP AHTHIVVRVL LLLLSICFFV GAAFYTAYTT 180
  181 NVTHRGIGFS LIFSPFAALT RLYLARFLNS PQYFIPYGTL CANVFATLLL SIMYMIPQIT 240
  241 HCTPVSRSVM YGIQNGFCAV LSTLSTFSNE LHTMPIKRAY IYCIISVAIS FSICVIVDGA 300
  301 TAWGHGYTEK Y