YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC594.04c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIIYSASDA AKWKVAVSPY LYQLSNLKLL FTGKLNFADF YYNTNPFVVG LLLSFILGNV  60
   61 LWGVSVWTKN TSQVDRLWPI LPTAFSLHFL FYGLGYNIAS RRLMIMAFLQ TLWSARLTYN 120
  121 YYRKGGYNRG AEDYRWVRVR QIMPKWIYPL FHYFYIHIFQ VLHLYLLASP TYIAMLAGNE 180
  181 RAFGAWDWIA LELFMFMFVL EMLADQQQWD YYEARNHYNV DKTVPPRFKY DLLSLGRGFN 240
  241 ATGLFRWSRH PNFLAEQLIW LSFYLFGAIA SESLLNWTIF AWLGLVGVFQ GSTRLTEKMS 300
  301 CEKYPLYRVY QDKVGRFFPR LDGSHWDIVD DDASLKED

Type	Start	End	Confidence
Cytoplasmic	1	40	0.53
Transmembrane Helix	41	66	0.79
Non-Cytoplasmic	67	76	0.46
Transmembrane Helix	77	99	0.84
Cytoplasmic	100	147	0.47
Transmembrane Helix	148	174	0.74
Non-Cytoplasmic	175	182	0.45
Transmembrane Helix	183	204	0.83
Cytoplasmic	205	252	0.47
Transmembrane Helix	253	271	0.59
Non-Cytoplasmic	272	272	0.24
Transmembrane Helix	273	289	0.74
Cytoplasmic	290	338	0.69