YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC11B10.07c
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTEIVKKP KHKRFKRPDK SRFVQQTLPA WQFIFTPWTV LPLLFLLGIV FAPLGAGMFV  60
   61 ASRRVKELRI DYTDCMNIGD EFKQVPSTNI EFQYKNVKNV TAMWKSSGDV CTLRFQIPEE 120
  121 MTSPVFAFYR LKNFYQNHRR YTVSADMFQL LGEARTVAQL KSYGFCKPLE ANEEGKPYYP 180
  181 CGIIANSLFN DSYSSLLRYE SFDSSNSLGL YNMTTNGTAW PEDRERYKKT KYNASQIVPP 240
  241 PNWAKMFPNG YTDDNIPDVS TWDAFQIWMR AAALPTFSKL ALRNVTTALQ PGIYEMNITY 300
  301 NFPVTEYKGT KTIMFSTTSV IGGKNYFLGI LYFVIGGLCA ASGVILSIAC LIKPRRVGDP 360
  361 RYLSWNRGKS S

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.73
Transmembrane Helix	38	60	0.89
Cytoplasmic	61	279	0.79
Transmembrane Helix	280	294	0.40
Non-Cytoplasmic	295	327	0.65
Transmembrane Helix	328	352	0.89
Cytoplasmic	353	371	0.73