YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19114441
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCVECGAEV DSLYTYYGRG TSNIRLAQCK NCKQFADKYI ELDVVLISMD VILMKPQVYR  60
   61 HLLFNSLSAR TFRNLTKCAK VVNFCILISL FNVFLVWSRL EKRAALFPYF TPAQAFLSQP 120
  121 IIRQYLTLLL ICLVETTVYQ ISVVLLLCLT MGWKSWTSAS GAVILSSSTR MLPVFMVIWD 180
  181 YDLSIAATVV EWVVLFSNVD ALCILTGSRR TFTDSTINSL

Type	Start	End	Confidence
Cytoplasmic	1	78	0.94
Transmembrane Helix	79	100	0.85
Non-Cytoplasmic	101	124	0.83
Transmembrane Helix	125	149	0.84
Cytoplasmic	150	155	0.68
Transmembrane Helix	156	178	0.71
Non-Cytoplasmic	179	184	0.66
Transmembrane Helix	185	206	0.72
Cytoplasmic	207	220	0.78