YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAP8A3.03
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.90
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	135	0.97
Transmembrane Helix	136	157	0.89
Cytoplasmic	158	164	0.88
Transmembrane Helix	165	186	0.91
Non-Cytoplasmic	187	198	0.77
Transmembrane Helix	199	216	0.92
Cytoplasmic	217	357	0.92
Transmembrane Helix	358	380	0.94
Non-Cytoplasmic	381	399	0.79
Transmembrane Helix	400	421	0.88
Cytoplasmic	422	430	0.76
Transmembrane Helix	431	452	0.91
Non-Cytoplasmic	453	453	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLLQRFFIY GLFLACFYTT VFGEKHFEAE EYRDSFLSQE NMNKINHTTI ERLFREMTEN  60
   61 DPSLLSSSKT LAELSKGELA KAREDLKSVL SFLKNNLPVD TESSSEAFTI EKDNNSCVWL 120
  121 NSVKSFVEKQ FSYSSGTNGI LATFLTAIPP NIFILLVPKS FDTSMLNLFV AVSAGSLLGD 180
  181 VFLQLLPTVY STNGGDFPAS SVYSILIGAL VFFLMDKGIR ILIHERPSSL SKPKKDGEET 240
  241 SSVNKPSASS TQTDVKGVEG LRKRNVKDDQ NSKGHEPDLI RHVVEEVSEE YNDKTVVYLN 300
  301 LLCDSFHNFM DGLAITSAFF TNTSIGISTT FAVLLHEIPA EIGDLAILLR NGYTKSQVLV 360
  361 LQMITMVTGL LGAIVATYIY TASSSSSPYG SFLLQLEDKL LPFTAGGFLY IAYLGVFPEL 420
  421 LEINLSKGKL GNMIYTALYM MFIVGGFSFL YYV