YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pcl1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSIFEARPK EAHSVNKIGW LRASVLGAND GILSLSGLLV GVVAANADIK VILITGVAGL  60
   61 MSGALSMAVG EYVSVSSQAD LEDADLQLER REMDADWDAE VDELAAIYRG RGLDEELSRT 120
  121 VAVQLMEYNA LEAHARDELG INIHTTAKPT LAALSSAASF SVGGIFPLLT SLITPLEYLS 180
  181 LVLPIATMFF LGMLGFVGAH IGGAKRVRAI LRAVVLGLLA MAATALVGRL LEIHALSLQY 240
  241 AI

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	43	0.89
Non-Cytoplasmic	44	50	0.73
Transmembrane Helix	51	70	0.92
Cytoplasmic	71	150	0.96
Transmembrane Helix	151	173	0.89
Non-Cytoplasmic	174	180	0.76
Transmembrane Helix	181	202	0.92
Cytoplasmic	203	209	0.85
Transmembrane Helix	210	231	0.90
Non-Cytoplasmic	232	242	0.86